PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029148-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 269aa    MW: 30329.8 Da    PI: 9.9037
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029148-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-161966148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      + +WT eEd +l++++++ G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00029148-RA 19 KVPWTREEDTILIKYIEKNGQGNWRALPKLAGLLRSGKSCRLRWTNYL 66
                      579*****************************99************97 PP
2Myb_DNA-binding47.93.1e-1572117148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T++E+  ++ +++ lG++ W+tIa+ ++ gRt++++k++w ++l
  PSME_00029148-RA  72 RGSFTQQEERSIIMLHAILGNK-WSTIASQLP-GRTDNEIKNFWSTHL 117
                       89********************.*********.***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2081466IPR017930Myb domain
SuperFamilySSF466894.93E-2916113IPR009057Homeodomain-like
SMARTSM007178.5E-131868IPR001005SANT/Myb domain
PfamPF002498.3E-151966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-222173IPR009057Homeodomain-like
CDDcd001672.65E-112166No hitNo description
PROSITE profilePS5129423.60967121IPR017930Myb domain
SMARTSM007175.2E-1471119IPR001005SANT/Myb domain
PfamPF002491.9E-1372117IPR001005SANT/Myb domain
CDDcd001673.11E-974117No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2574121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
FSVATMGKGP CCKRTGLMKV PWTREEDTIL IKYIEKNGQG NWRALPKLAG LLRSGKSCRL  60
RWTNYLNPDI KRGSFTQQEE RSIIMLHAIL GNKWSTIASQ LPGRTDNEIK NFWSTHLKKR  120
LLKMGLDPST HAPIAEANPS APQWSEALAL MRHKAQWESA RLEAEARLSR ESLLMPANSS  180
AGHHANNTVE MITIPSCNNP PTDYFLKMWN SEAGKVFRKE SSRRMFINSF GDSCHVFDLN  240
HDPNIAIDDQ VLSSEIPKSP EPPVRLLPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28171215108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445088.19e-88transcription factor MYB41
RefseqXP_006491064.19e-88transcription factor MYB41
SwissprotQ9M2D93e-85MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A222UAM79e-94A0A222UAM7_GINBI; R2R3MYB15
STRINGXP_006491064.13e-87(Citrus sinensis)
STRINGXP_006445088.13e-87(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-87myb domain protein 17