PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028766-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 391aa    MW: 44084.1 Da    PI: 7.1087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028766-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l+ +++++G g+W++++   g+ R++k+c++rw +yl
  PSME_00028766-RA 14 RGPWTPEEDKKLLAYIEKHGLGNWRSVPVNAGLQRCGKSCRLRWTNYL 61
                      89********************************************97 PP
2Myb_DNA-binding53.27.1e-1767112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ +E++ +++++++lG++ W+tIa +++ +Rt++++k++w+++l
  PSME_00028766-RA  67 RGKFSMQEEQTIIQLHALLGNR-WSTIATHLP-KRTDNEIKNYWNTHL 112
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.622961IPR017930Myb domain
SuperFamilySSF466892.7E-3111108IPR009057Homeodomain-like
SMARTSM007171.2E-141363IPR001005SANT/Myb domain
PfamPF002491.0E-161461IPR001005SANT/Myb domain
CDDcd001672.53E-121661No hitNo description
PROSITE profilePS5129425.80562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-2665116IPR009057Homeodomain-like
SMARTSM007172.9E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
CDDcd001677.42E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGRAPCCDKA GVKRGPWTPE EDKKLLAYIE KHGLGNWRSV PVNAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SMQEEQTIIQ LHALLGNRWS TIATHLPKRT DNEIKNYWNT HLRKRLMKMG  120
IDPVTHKASF DPLNFSDGQK SKEFRALSHK KQWENARLEA EARHRETNNP NPRAPKGLWM  180
TGNNNGSSDV LNMIRLQGNN NTRSTMSSAS TNNSSHIDHL IESPTSSLSF VESSDMLSLF  240
HQSNPLSHQE PICDYLQKKP LCEHFTGIDI NNNYSTTDGG SNPTDPHDLL IPCRLNDPIF  300
SSKHCNYSST HSVSNEISSH GDLKSEISNH GDLNTDLIQQ YLSEGPSCEP ADRSELGPDD  360
ESTIANLVSE KDYWNDILNM VNSSSSVDNI F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25141167108B-MYB
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1161910.0BT116191.1 Picea glauca clone GQ03713_F09 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LE633e-95MY106_ARATH; Transcription factor MYB106
STRINGBostr.1460s0105.1.p1e-94(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.14e-91myb domain protein 106