PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028759-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 705aa    MW: 74306.8 Da    PI: 9.1474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028759-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-054668123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  PSME_00028759-RA 46 FVCEICNKGFQRDQNLQLHRRGH 68
                      89*******************88 PP
2zf-C2H212.20.00055122144123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H +t+
  PSME_00028759-RA 122 WKCDKCSKRYAVQSDWKAHSKTC 144
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-54568IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.94E-74568No hitNo description
PROSITE profilePS5015710.9494668IPR007087Zinc finger, C2H2
SMARTSM003550.0174668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SMARTSM0035527087117IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-4110143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.94E-7117142No hitNo description
SMARTSM00355140122142IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
RPADSRRISM SNMTGEASFS SGNRIDDPEA EVIALSPKTL MATNRFVCEI CNKGFQRDQN  60
LQLHRRGHNL PWKLRQRTTK EIRKRVYICP EKSCVHHDPS RALGDLTGIK KHFCRKHGEK  120
KWKCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARV  180
SVGINSGVGQ MQSNPLAGAG GVMAAHVMGA PSSPNMMRQL GGGSSALEAQ FNNGSVFRHS  240
FGNNTAGFNA RPRLSLWLGQ DPGREQALGG NVNHIDAAAA SGLFTQSPKT MLGSSDYDDS  300
QGQKTLSSLL PMASSNSGSM YSSFFTSGSM NAAGSSGLQQ NEISDNYGTG VSTWNADRVS  360
AAARLSLSTS AGLTTSSSSG TNINDNGNLA GTVNNSSAYG SQQQHNTHSA QMSATALLQK  420
AAQMGATASN SAFRGFGIAG SNSNSVGLGL SWQGSGAQEQ QRPHGTTGMV TQNAHNSNLF  480
MKGPLDHMGS HVSDQGGSGF TSSQPFNGSS RSAENAGLHD LMNSLSGGGN GLMAGGSLSA  540
IQSTFGENMD YSGNFTGLNM IHARSTNMQN PMKDNAIGEG LQQSLQRRSS SSSLSPSSSL  600
SQQMMMQQGG GSSNHTTLIS GMGNPTTRNE DGSGGDDGLT RDFLGVGGVV AAGGMHGRAF  660
SQRGDHFNAA NFTSLGSSGM DMAASFHSHR AENLSAHGKS WDAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34118181366Zinc finger protein JACKDAW
5b3h_F5e-34118181366Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.11e-156protein indeterminate-domain 1-like isoform X1
TrEMBLA0A2K1L2D81e-154A0A2K1L2D8_PHYPA; Uncharacterized protein
STRINGPP1S165_3V6.11e-153(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-107indeterminate(ID)-domain 2