PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00028435-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 215aa MW: 25035 Da PI: 6.9167 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 168.8 | 6.5e-53 | 71 | 175 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw++q +e+ ++fk+h+lPlarikki+k+dedvkmisaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ d PSME_00028435-RA 71 QLQMFWQQQmqeMEQIAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLD 163 89*****99888999****************************************************************************** PP NF-YC 91 flvdivprdelk 102 fl+divprde+k PSME_00028435-RA 164 FLLDIVPRDEVK 175 *********875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.53E-31 | 65 | 165 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.7E-36 | 87 | 156 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.0E-21 | 93 | 156 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
GCDLVSFTAM EGKYPHLQSS PPPPVSHGSS SLMHNSIFQQ QQPQMPLQHH QQQLQVSMQP 60 HLHYMQIQKQ QLQMFWQQQM QEMEQIAEFK QHQLPLARIK KIMKSDEDVK MISAEAPVLF 120 SKACELFILE LTLRSWLHTE ENKRRTLQRN DIAGAISRGD VLDFLLDIVP RDEVKHMMAA 180 QQAMSQQLIP HQPLMPDQQL MYQPPQNILE VKDKI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-49 | 79 | 171 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 143 | 149 | RRTLQRN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF085083 | 0.0 | EF085083.1 Picea sitchensis clone WS0296_J03 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NUT0 | 6e-93 | A9NUT0_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-50 | nuclear factor Y, subunit C1 |