PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00028326-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 741aa MW: 82702.2 Da PI: 4.6873

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00028326-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.8	4.2e-53	14	141	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 ppGfrF+P+d+e+v +yLk+kv+g+k+e +vi+e+d+yk+ePwdLp k + +++ ewyfF++rd+ky++g+r+nrat++gyWkatgkd++v PSME_00028326-RA 14 PPGFRFRPSDDEIVGFYLKNKVQGNKFEY-DVIREIDLYKCEPWDLPeKsFLPSRDLEWYFFCPRDRKYPNGSRSNRATEAGYWKATGKDRKV 105 9*************************9.9***********95334455777********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 s +++++g kktLvfykgrap+ge+t+W+mheyrle PSME_00028326-RA 106 GS-RSNKIGRKKTLVFYKGRAPHGERTNWLMHEYRLE 141 9.9999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-61	5	163	IPR003441	NAC domain
PROSITE profile	PS51005	57.64	13	163	IPR003441	NAC domain
Pfam	PF02365	1.6E-27	14	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
SMAESVQAAA VNFPPGFRFR PSDDEIVGFY LKNKVQGNKF EYDVIREIDL YKCEPWDLPE 60 KSFLPSRDLE WYFFCPRDRK YPNGSRSNRA TEAGYWKATG KDRKVGSRSN KIGRKKTLVF 120 YKGRAPHGER TNWLMHEYRL EGTQCKGGTN LQDLYVLSRV FRKPKQGLND QEPTQEAFWP 180 VSNNNLSPTE ISDEDQSERS SPAKQEDDTR ASSGLRSETS SEILDNKAED NCIDGPMESL 240 QDRSNPSCNL VSLHETSINT NDDSQRGSQK LQSDSFYSPG EEINFPEIPV NACFDPIDYL 300 PWNHMNSFGV ESNTFDGNFH DADVFDQDSL DIFSLLHNFE NCHELDTFQF STEEEKNDEP 360 CVAGFPTSMV DNGVPIQIRS RPQIWQGYQQ PLPAMPTQGT AMRRLRLQIH KTEASADGRK 420 EHRFTVNSQS ASDDCDSDDS NDSEVLTQLE DSPLASLSSQ ISRCVVEDNG GSPVTEYQYI 480 ADGADSDIVH NSVESSERVA KTNNMNLAET QLLPFSLFPV GEASEKSDMS VNSEEAGDKS 540 VLIERSEYVM SSASSQSSST EYQLEMTVSH PTSSHEMESV SVNSSALGME SPTVLASNKV 600 SVSEVAVSFG SRQLGAINSK NIDLEEIHMS NKGSGKFTGF NAISSGLKLR GKSRENYASD 660 QVEESRIITE NFSDRCSKDS RKGFSSLKKA LSVFIQPSQL QSKISKGTYC ISLKCLLSTV 720 LLVLCIWTWH SARSSSTSIL Q

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

SMAESVQAAA VNFPPGFRFR PSDDEIVGFY LKNKVQGNKF EYDVIREIDL YKCEPWDLPE  60
KSFLPSRDLE WYFFCPRDRK YPNGSRSNRA TEAGYWKATG KDRKVGSRSN KIGRKKTLVF  120
YKGRAPHGER TNWLMHEYRL EGTQCKGGTN LQDLYVLSRV FRKPKQGLND QEPTQEAFWP  180
VSNNNLSPTE ISDEDQSERS SPAKQEDDTR ASSGLRSETS SEILDNKAED NCIDGPMESL  240
QDRSNPSCNL VSLHETSINT NDDSQRGSQK LQSDSFYSPG EEINFPEIPV NACFDPIDYL  300
PWNHMNSFGV ESNTFDGNFH DADVFDQDSL DIFSLLHNFE NCHELDTFQF STEEEKNDEP  360
CVAGFPTSMV DNGVPIQIRS RPQIWQGYQQ PLPAMPTQGT AMRRLRLQIH KTEASADGRK  420
EHRFTVNSQS ASDDCDSDDS NDSEVLTQLE DSPLASLSSQ ISRCVVEDNG GSPVTEYQYI  480
ADGADSDIVH NSVESSERVA KTNNMNLAET QLLPFSLFPV GEASEKSDMS VNSEEAGDKS  540
VLIERSEYVM SSASSQSSST EYQLEMTVSH PTSSHEMESV SVNSSALGME SPTVLASNKV  600
SVSEVAVSFG SRQLGAINSK NIDLEEIHMS NKGSGKFTGF NAISSGLKLR GKSRENYASD  660
QVEESRIITE NFSDRCSKDS RKGFSSLKKA LSVFIQPSQL QSKISKGTYC ISLKCLLSTV  720
LLVLCIWTWH SARSSSTSIL Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-52	9	140	11	140	Stress-induced transcription factor NAC1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	6e-74	NAC domain containing protein 57