PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00028312-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 332aa MW: 37228.7 Da PI: 4.7596 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.8e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv+ ++++G g+W+ +++ g+ R++k+c++rw +yl PSME_00028312-RA 14 KGPWTAEEDRKLVNFITMHGHGCWREVPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 44.2 | 4.6e-14 | 70 | 110 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ E++l++d+++ G++ W++Ia+ ++ gRt++++k++w++ PSME_00028312-RA 70 LSESEEKLIIDLHAAIGNR-WSRIAAQLP-GRTDNEIKNYWNT 110 5899***************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.939 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.91E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.671 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-12 | 70 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.15E-10 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAE EDRKLVNFIT MHGHGCWREV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SESEEKLIID LHAAIGNRWS RIAAQLPGRT DNEIKNYWNT RIKKKLRQMG 120 IDPVTHKPLS QMQMQSTPTQ NLLLQENDNQ QQQQQELNEP EQKQSSNGAV ETLVLRPTEP 180 NNDIEPLENF NMEDSIQLFN VCSPTSVISL SGRTEEVDSD DSDQVCKSFG NGGHAQCIGR 240 EGSAVKAECG LSVWDPMGGV LGDPLSDYNS QWNVDLESWT AGLDAHAASA SAWIQQLPDC 300 QWNDFQGDFE ICSKSCPETL QRLGPFLDDD GM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 116 | RIKKKLR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF601064 | 0.0 | EF601064.1 Picea glauca R2R3-MYB transcription factor MYB1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A5JYE5 | 0.0 | A5JYE5_PICGL; R2R3-MYB transcription factor MYB1 | ||||
STRING | XP_010032717.1 | 2e-79 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 3e-79 | myb domain protein 20 |