PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028312-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 332aa    MW: 37228.7 Da    PI: 4.7596
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028312-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.8e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +lv+ ++++G g+W+ +++  g+ R++k+c++rw +yl
  PSME_00028312-RA 14 KGPWTAEEDRKLVNFITMHGHGCWREVPKLAGLLRCGKSCRLRWTNYL 61
                      79******************************99************97 PP

2Myb_DNA-binding44.24.6e-1470110446
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        ++ E++l++d+++  G++ W++Ia+ ++ gRt++++k++w++
  PSME_00028312-RA  70 LSESEEKLIIDLHAAIGNR-WSRIAAQLP-GRTDNEIKNYWNT 110
                       5899***************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-23563IPR009057Homeodomain-like
PROSITE profilePS5129423.939965IPR017930Myb domain
SuperFamilySSF466891.87E-2811108IPR009057Homeodomain-like
SMARTSM007172.1E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001671.91E-111661No hitNo description
Gene3DG3DSA:1.10.10.607.2E-2464116IPR009057Homeodomain-like
PROSITE profilePS5129418.67166116IPR017930Myb domain
SMARTSM007177.6E-1366114IPR001005SANT/Myb domain
PfamPF002491.1E-1270110IPR001005SANT/Myb domain
CDDcd001679.15E-1071110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDRKLVNFIT MHGHGCWREV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SESEEKLIID LHAAIGNRWS RIAAQLPGRT DNEIKNYWNT RIKKKLRQMG  120
IDPVTHKPLS QMQMQSTPTQ NLLLQENDNQ QQQQQELNEP EQKQSSNGAV ETLVLRPTEP  180
NNDIEPLENF NMEDSIQLFN VCSPTSVISL SGRTEEVDSD DSDQVCKSFG NGGHAQCIGR  240
EGSAVKAECG LSVWDPMGGV LGDPLSDYNS QWNVDLESWT AGLDAHAASA SAWIQQLPDC  300
QWNDFQGDFE ICSKSCPETL QRLGPFLDDD GM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116RIKKKLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6010640.0EF601064.1 Picea glauca R2R3-MYB transcription factor MYB1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE50.0A5JYE5_PICGL; R2R3-MYB transcription factor MYB1
STRINGXP_010032717.12e-79(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.13e-79myb domain protein 20