PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00028196-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 147aa MW: 16509.6 Da PI: 4.3332 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 45.4 | 2.3e-14 | 40 | 92 | 47 | 99 |
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++lp eer da+ss+vyeA r rdPv G+vgvi++lq+++++l+++l l k+ PSME_00028196-RA 40 TNLPAEERGDAVSSMVYEASERNRDPVLGCVGVIKDLQNKVAELESQLFLHKQ 92 57899****************************************99977765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.2E-12 | 41 | 89 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MSDNTVRCLQ NPKKVMYEEM CSGAIFPGGR SPEVPVGTKT NLPAEERGDA VSSMVYEASE 60 RNRDPVLGCV GVIKDLQNKV AELESQLFLH KQSQQYANLL TIFTGSQEPA SDPNFYCESP 120 PDSVDTFKRQ PVFDYVDTLP LWELFWP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597159.1 | 1e-15 | LOB domain-containing protein 1 | ||||
TrEMBL | B8LQI9 | 2e-24 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | AES67410 | 4e-15 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 2e-13 | LBD family protein |