PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00028195-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 20992.8 Da PI: 6.5012 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.1 | 1.7e-39 | 32 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk++r+kC+k+Cvlapyfp+++p+kf+ v++l+G+ + +kll++lp e+r da+ss+vyeA r rdPv G+vgvi++lq+++++l+a+ PSME_00028195-RA 32 PCAACKIQRKKCTKKCVLAPYFPQDDPQKFRLVQRLYGNGHAIKLLQNLPAEKRGDAVSSMVYEASERNRDPVLGCVGVINDLQNKVAELEAQ 124 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e PSME_00028195-RA 125 LASTQAE 131 **99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.905 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-38 | 32 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
LALSEKTGSA HSNGKMSDVT ASIKPEGTSR TPCAACKIQR KKCTKKCVLA PYFPQDDPQK 60 FRLVQRLYGN GHAIKLLQNL PAEKRGDAVS SMVYEASERN RDPVLGCVGV INDLQNKVAE 120 LEAQLASTQA EVTNISQQHG DLLTIFTGSQ EPASDPNFYC ESPPDSVDTV MRQPVFHYVD 180 NLPLWELFWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-30 | 31 | 132 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-30 | 31 | 132 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597159.1 | 2e-45 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 7e-41 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 1e-40 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | B8LQI9 | 2e-67 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | AES67410 | 7e-45 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 3e-43 | LOB domain-containing protein 1 |