PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00028192-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 275aa    MW: 30104.4 Da    PI: 7.472
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00028192-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.9e-18139173135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+ C  t+TplWR+gp+g+k+LCnaCG++y k+++
  PSME_00028192-RA 139 CADCERTTTPLWRSGPEGPKSLCNACGIRYNKRRR 173
                       *******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.61E-13132173No hitNo description
PROSITE profilePS5011412.743133168IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-17133184IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-15137173IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.04E-10138170No hitNo description
PROSITE patternPS003440139164IPR000679Zinc finger, GATA-type
PfamPF003201.6E-15139173IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MIAPDWEFNG VVRSPSGYGS SRSLSSLETN DVKTMDLGFM RFKEDEEEES DDINVHGHTK  60
LELGLSRSDS NACEEDESTF KADHGFRRIL VTSLTTDSDV NDDQVGETAG ITDQENAPAD  120
RVNKGKKTAA SSRNGPRVCA DCERTTTPLW RSGPEGPKSL CNACGIRYNK RRRAMIAAAA  180
AATESFSYKK RSTNSCSTGL AGLKKNNKFT TKSSLGAASD RQAQFSAFYK NHGLGKDMKK  240
HIQEEFSRLP LLRSFGELEE AAASLMAIKF GHCHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.19e-16GATA transcription factor 16