PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00028077-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Dof

Protein Properties

Length: 556aa MW: 59808.2 Da PI: 5.1926

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00028077-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8.3e-40	141	201	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprCds +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s+ PSME_00028077-RA 141 PDKLLPCPRCDSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHST 201 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.1E-32	143	199	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	145	199	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	147	183	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-24	149	198	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MKDPGFKLFG KTIPMRDGEE NEGLLGSKPG HENTCYTMEA PAQFAQVSDK DVGKEVSPEP 60 EVEGPHDNNP EETRSITVIS DCGEDECKKS MEDLEREGGS TATESDLRSE NLEEKEAMES 120 ENLEEKESKV SENQDKILKK PDKLLPCPRC DSLDTKFCYY NNYNVNQPRH FCKNCQRYWT 180 AGGTMRNVPV GAGRRKNKHS TSHYRHMMMT DGLTTARADA PDAAAHHQVI PNAHSSSSRV 240 LKGSHILLPL DVESASGTIL NFGPDFPLCE SMSTALNLAD QTVVTRKAFI NKEDEKGPLG 300 CGENRDDTSC ESSITASTTA EKEEASKSFR TIPQVDQGGM MGWPSNVPPP QHYYGGGPWA 360 YGWNFCWGGR SVTGGPSGIA YAAESGNTSA GSWNNGTSGA GPPGMWAAGI PWPFVPGPYW 420 GSPTGWGGGT WNMPFSTQAP PVTGRPSSGP SSSSAGSSGS ATLGKHSRDI TQSEGKPDGC 480 LWVPKTIRID DPDEAARSSI WTTLGIGNKP ESITTGGIFK AFQPKTEVKD SVKVSTQGLC 540 SNPAALSRSM AFQESS

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MKDPGFKLFG KTIPMRDGEE NEGLLGSKPG HENTCYTMEA PAQFAQVSDK DVGKEVSPEP  60
EVEGPHDNNP EETRSITVIS DCGEDECKKS MEDLEREGGS TATESDLRSE NLEEKEAMES  120
ENLEEKESKV SENQDKILKK PDKLLPCPRC DSLDTKFCYY NNYNVNQPRH FCKNCQRYWT  180
AGGTMRNVPV GAGRRKNKHS TSHYRHMMMT DGLTTARADA PDAAAHHQVI PNAHSSSSRV  240
LKGSHILLPL DVESASGTIL NFGPDFPLCE SMSTALNLAD QTVVTRKAFI NKEDEKGPLG  300
CGENRDDTSC ESSITASTTA EKEEASKSFR TIPQVDQGGM MGWPSNVPPP QHYYGGGPWA  360
YGWNFCWGGR SVTGGPSGIA YAAESGNTSA GSWNNGTSGA GPPGMWAAGI PWPFVPGPYW  420
GSPTGWGGGT WNMPFSTQAP PVTGRPSSGP SSSSAGSSGS ATLGKHSRDI TQSEGKPDGC  480
LWVPKTIRID DPDEAARSSI WTTLGIGNKP ESITTGGIFK AFQPKTEVKD SVKVSTQGLC  540
SNPAALSRSM AFQESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC688684	0.0	KC688684.1 Pinus pinaster Dof10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	T2B8P6	0.0	T2B8P6_PINPS; Dof10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-38	cycling DOF factor 2