PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00028054-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 21664.4 Da PI: 5.9244 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124 | 7.4e-39 | 22 | 122 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaC++lrr+C ++C lap fp ++p+kfa vh +FGasn++++l+++ +e+r+da+ss+v+eA++ +rdPvyG++gv+ +lqqq+ l+a+ PSME_00028054-RA 22 PCAACRTLRRRCGEECLLAPFFPPDDPHKFATVHTVFGASNIIRMLQDVTNEHRDDAVSSMVFEARVTLRDPVYGCAGVVCRLQQQVLDLQAQ 114 7******************************************************************************************** PP DUF260 94 lallkeel 101 la++++++ PSME_00028054-RA 115 LATAQAQI 122 ***99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.311 | 21 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-38 | 22 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
SHKYKFMLQM SEGNPRRRVA NPCAACRTLR RRCGEECLLA PFFPPDDPHK FATVHTVFGA 60 SNIIRMLQDV TNEHRDDAVS SMVFEARVTL RDPVYGCAGV VCRLQQQVLD LQAQLATAQA 120 QIFNLHCQQG NLVDFLTSSN SSFEKRGETA DYDYDEPLGS SWMDSPGSQV TDGEKDVNVL 180 LHEMFMCSRY YG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-35 | 22 | 129 | 11 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-35 | 22 | 129 | 11 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251265.1 | 3e-53 | LOB domain-containing protein 1 | ||||
Refseq | XP_015057811.1 | 3e-53 | LOB domain-containing protein 1 | ||||
Refseq | XP_021680496.1 | 4e-53 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-47 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2P6QHT3 | 2e-51 | A0A2P6QHT3_ROSCH; Putative transcription factor AS2-LOB family | ||||
TrEMBL | A0A3Q7J1V1 | 5e-52 | A0A3Q7J1V1_SOLLC; Uncharacterized protein | ||||
TrEMBL | Q6L463 | 7e-52 | Q6L463_SOLDE; LOB domain protein 1, putative | ||||
STRING | Solyc11g072470.1.1 | 1e-52 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-39 | LOB domain-containing protein 1 |