PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00027983-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 142aa MW: 15840.2 Da PI: 7.8541 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.1 | 7.2e-39 | 12 | 110 | 2 | 100 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 CaaCk++++kC+++C lapyfp+++p +f +h++FG +v+kllk+lp e+r da+sslvyeA+ara dPv+G+v+vi++l +++e+++ +l PSME_00027983-RA 12 CAACKFQKKKCSEKCLLAPYFPHNDPDRFLLIHRVFGYGHVVKLLKDLPAERRGDAVSSLVYEARARAADPVHGCVAVINNLLKKIEEVQLQL 104 ********************************************************************************************* PP DUF260 95 allkee 100 a+++e+ PSME_00027983-RA 105 ASTHEK 110 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.472 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-37 | 12 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MTSHVSKEQS TCAACKFQKK KCSEKCLLAP YFPHNDPDRF LLIHRVFGYG HVVKLLKDLP 60 AERRGDAVSS LVYEARARAA DPVHGCVAVI NNLLKKIEEV QLQLASTHEK LDINISVLHG 120 NLYTQFTGSC EGWDPDLYSA SP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-31 | 10 | 111 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-31 | 10 | 111 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307415.1 | 2e-37 | PREDICTED: LOB domain-containing protein 1-like | ||||
Refseq | XP_007142160.1 | 1e-37 | hypothetical protein PHAVU_008G257400g | ||||
TrEMBL | B8LQI9 | 2e-49 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | XP_007142160.1 | 5e-37 | (Phaseolus vulgaris) | ||||
STRING | XP_004307415.1 | 7e-37 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 8e-38 | LOB domain-containing protein 1 |