PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027978-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 338aa    MW: 38178 Da    PI: 5.0714
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027978-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-0953762246
                      T-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                      + W++Ia++++ gRt++++k++w++
  PSME_00027978-RA 53 KIWSAIASHLP-GRTDNEIKNHWNS 76
                      47*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.81E-84285IPR009057Homeodomain-like
PfamPF002495.3E-75476IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-115482IPR009057Homeodomain-like
CDDcd001672.90E-65578No hitNo description
PROSITE profilePS500906.5395578IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MRISPSFLYM ESLGISIYLP SSILYRLDFI DGNEEVSLDT LRLHFFHTFT TSKIWSAIAS  60
HLPGRTDNEI KNHWNSRLKK QLIFMGIDPV AHGLLPIDSF IPVSSTVGSS IAAGWKTALI  120
ESELGQLTRE YVNSIAGEYS CLPPSQIEKL SATIINNTVN GPTVWARPIS SESSLLLPSI  180
SLMDQLTRPH TSRWLHGFQK QTKRDFDARQ YMDPVEDNAF LQEVLQFGNL EKISEGMPNM  240
IQSSEIPSNS RNEPDVFRDE LSSHYENMYD DSGPSHRGGI SEILENRIQY QTNDPFRSPI  300
STENLPVARV DLLNKGNENN CWNNLLNLTE NGMLSSRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-16myb domain protein 16