PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027930-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 235aa    MW: 26226.4 Da    PI: 6.9967
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027930-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.6e-141461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+  ++  G g W++ ++  g+ R++k+c++rw +yl
  PSME_00027930-RA 14 KGAWTKEEDDRLIAHIQARGEGAWRSLPKAAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding55.61.3e-1767111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++T+eEdel+++++   G++ W++Ia +++ gRt++++k++w+++
  PSME_00027930-RA  67 RGSFTEEEDELIIELHSVVGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-22564IPR009057Homeodomain-like
PROSITE profilePS5129413.952961IPR017930Myb domain
SMARTSM007171.8E-91363IPR001005SANT/Myb domain
SuperFamilySSF466891.06E-2813108IPR009057Homeodomain-like
PfamPF002496.4E-121461IPR001005SANT/Myb domain
CDDcd001671.34E-71661No hitNo description
PROSITE profilePS5129428.74362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2865116IPR009057Homeodomain-like
SMARTSM007174.7E-1766114IPR001005SANT/Myb domain
PfamPF002494.4E-1667111IPR001005SANT/Myb domain
CDDcd001672.13E-687112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLIAHIQ ARGEGAWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGSF TEEEDELIIE LHSVVGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSKG  120
LDPKTHCPIG QPYNSNNTGV LDHHEIPAFQ NPRTPEIADF FGHDRSESSP IEPAALDAEE  180
HPDLNLNLCI SLPSNSAAAA NRPSSLEISN STSVGGLIIP EILEGRRNDE RKSEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0855950.0EF085595.1 Picea sitchensis clone WS0285_N09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028718.13e-91PREDICTED: myb-related protein 308
SwissprotP813936e-86MYB08_ANTMA; Myb-related protein 308
TrEMBLA9NW871e-130A9NW87_PICSI; Uncharacterized protein
STRINGXP_010028718.11e-90(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-84myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]