PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027655-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 859aa    MW: 94264.6 Da    PI: 6.7957
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027655-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.1e-11429485155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  PSME_00027655-RA 429 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 485
                       57*******************4444.2455535555.779999**************98 PP
2AP245.51.9e-14530579355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PSME_00027655-RA 530 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 579
                       9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.70E-19429495No hitNo description
SuperFamilySSF541718.5E-15429495IPR016177DNA-binding domain
PfamPF008476.7E-9429485IPR001471AP2/ERF domain
SMARTSM003806.4E-23430499IPR001471AP2/ERF domain
PROSITE profilePS5103217.385430493IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-12430494IPR001471AP2/ERF domain
PRINTSPR003675.4E-6431442IPR001471AP2/ERF domain
CDDcd000184.08E-24528589No hitNo description
SuperFamilySSF541711.63E-17528589IPR016177DNA-binding domain
SMARTSM003807.1E-33529593IPR001471AP2/ERF domain
PROSITE profilePS5103219.203529587IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-18529588IPR001471AP2/ERF domain
PfamPF008472.6E-9530579IPR001471AP2/ERF domain
PRINTSPR003675.4E-6569589IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MGSVNNWLGF SLSPNMTVEL QDSSQSQSAS AVTVATSGMV HSSVGDPSNM NMNMNIGFGS  60
RDCFSHNAPP PPMHMHIPPE MTLRSDGSLY ILDSINRSQN EDWHLKNLEQ TRSMQDAESQ  120
QHLISADLSM LVGGRSDHMC SDSRYDHNMI CQSTTTTNNN RRHDGEGPKL EDFLGGASLG  180
GGGGQYSESR TSEISQPTAN LNDMYGTAPS SFNDGDMKSS FMSDSARLNC FHAFDIADSE  240
LSATNSSKRS EDQHSIKAES LSGVSAIHSL NLRDSYDHNS NEYIFPECTL QLPQTSGVNN  300
NNINGLSMIK TWLRTQPTSS SAESKMTNTT NTNYGNAASC STITTTTATT NPEQPKEGMD  360
ALTNIQSLKL SMSPTSQSTT SLAIVPATSQ NGTLDTSLPD SKKRLIPEKP TTSEPAIRKS  420
IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK GRQGGYDKEE KAARAYDLAA  480
LKYWGPTTTT NFPISNYEKE LEEMKHMTRQ EYVASLRRKS SGFSRGASMY RGVTRHHQHG  540
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKGILASS  600
TLPVGGHVKR IKEAEPSDPS VDGRRNDEDS STLSSYATST YSNGTNSKTG HEWPLIAFQN  660
HANQQRGMWC KQEVQQNQGP QDFQVQLHSL HPQKFFQPSV MTANATVLHN LMTLQESPSV  720
DSNSTGSTSG LFTNISANNL AGNGLLMAGN TPTMHQSMGA TDNQTNRATF GQSEQGSLKG  780
NSAYESMNLY GDPYSRGVYY LPQQQQQQTV AGTVKASNYD SNAAAYNNWM TTTPAQALAQ  840
RPNGLTVCHA PIFSIWNDS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1057440.0BT105744.1 Picea glauca clone GQ02827_L11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804192.21e-179AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A088BUC10.0A0A088BUC1_9SPER; Aintegumenta-like transcription factor baby boom
STRINGXP_008804192.11e-179(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-123AP2 family protein