PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027447-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 216aa    MW: 23913.4 Da    PI: 10.033
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027447-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.3e-184781135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ C  t TplWR+gp+g+k+LCnaCG++y kk++
  PSME_00027447-RA 47 CADCERTATPLWRSGPQGPKSLCNACGIRYNKKRR 81
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.19E-124081No hitNo description
PROSITE profilePS5011412.1234176IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-124193IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-154581IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.91E-104683No hitNo description
PfamPF003201.3E-154781IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404772IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEIYFFGLYF EIVGKTVGIT KQENASAAHV NKGKRIAGSS RNCPRICADC ERTATPLWRS  60
GPQGPKSLCN ACGIRYNKKR RAMIAVKIST NSWSTSLAGL NKNNKFTTKS NLGTASDRQA  120
QFSSFYKNRG LGKDLNNHIQ KELTQLGINN NLLNPFWLCF VKPAVAYMGV VPLLNLQDNV  180
GNGNHDDRKN KSSPSREIDY LCCGSCGVDI LIQIFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.13e-17GATA transcription factor 20