PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00027176-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 387aa MW: 44187 Da PI: 6.4411 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 124.8 | 7.1e-39 | 33 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelvv+yLkkk+++++l+++e + +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l PSME_00027176-RA 33 LPPGFRFHPTDEELVVHYLKKKASSTPLPAQE-------------T------FGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIL 106 79************************988832.............2......2679************************************* PP NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++vg+kk Lvfy gr pkg kt+W+mheyrl PSME_00027176-RA 107 TStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 144 998888899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.044 | 11 | 194 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-49 | 28 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-28 | 34 | 144 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-49 | 182 | 194 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
ILSEFGQFDF FCSNCELMES PTSFLGSHQQ PQLPPGFRFH PTDEELVVHY LKKKASSTPL 60 PAQETFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSTS GGTQKVGVKK 120 ALVFYGGRPP KGIKTNWIMH EYRLADSGAR PSSFPNKKGS LTESIHFNYN WYIDFDDTVV 180 LQLDDWVLFR IYKKNGHSQR VQGAERDESP SVDEVMTSFP NIEQQNKLQL PKLGPFSGLL 240 ETDDPFIEGL LNDEAMDGNG NISRLPHQVH SSNLSHNNFN NRNDNNSDCQ FEVVPKQEAL 300 AVDNENKFNS LKRTLSLAAF GDEEIHFAKR FNDMQNNYSY NVNNNVSALL NSMQPNQTFQ 360 QQNFLSALSD RQQNFRLPYI QNMHWSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-53 | 30 | 200 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-53 | 30 | 200 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-53 | 30 | 200 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-53 | 30 | 200 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-53 | 30 | 200 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-53 | 30 | 200 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-53 | 30 | 200 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111167 | 1e-165 | BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006841705.1 | 1e-91 | NAC transcription factor 56 | ||||
Swissprot | A0SPJ6 | 8e-70 | NAMB2_TRITD; NAC transcription factor NAM-B2 | ||||
TrEMBL | W1P8R5 | 3e-90 | W1P8R5_AMBTC; Uncharacterized protein | ||||
STRING | ERN03380 | 5e-91 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 5e-69 | NAC domain containing protein 25 |
Publications ? help Back to Top | |||
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