PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00027147-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | bHLH | ||||||||
Protein Properties | Length: 133aa MW: 14814 Da PI: 8.3929 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.4 | 9.5e-07 | 97 | 124 | 2 | 29 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 2 rrahnerErrRRdriNsafeeLrellPk 29 +r h+++E +RR+++N ++ Lr+ lP PSME_00027147-RA 97 KRRHKMVEMQRRKDMNALLSILRSRLPG 124 566**********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.05E-5 | 95 | 124 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.0E-4 | 95 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MSIPSWLGSE FLACDDLVQK LDVEGIWSSN PFLSTERIEV PPVYNTHHAS ICNSVNGCNC 60 GTLADHPSLS NPVLMATFCN SSRPNAGLSQ GAVPRNKRRH KMVEMQRRKD MNALLSILRS 120 RLPGENFRVC FLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |