PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00027034-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TCP
Protein Properties Length: 623aa    MW: 69240.8 Da    PI: 10.441
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00027034-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.61.3e-392633902133
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksa 94 
                       +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak++i+elt+++s sa +  ++++ +++     ++  k++
  PSME_00027034-RA 263 TGRKDRHSKVYTAKGPRDRRVRLSALTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELTQLPSRSALNI-PNQEPKAE-----DEGIKEQ 349
                       79**************************************************************77777333.12222222.....2233333 PP

               TCP  95 akskksqksaasa..lnlakesrakarararertrekmrik 133
                       a+++ + +++a+a   + a +sra ar+rarer +e+ + +
  PSME_00027034-RA 350 AEQEIQMHNEAAAksGARATDSRAIARERARERAKERIQER 390
                       3222222222222003444499***********99987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-31263390IPR005333Transcription factor, TCP
PROSITE profilePS5136933.467265323IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.447369386IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MSTTESCRLV CAGRQAGNPR LRVHWVLWGI GASYKEDEKS LLYSFSYSRR RSRRTHVRVL  60
SVNPRDGMAK SFGRTKFKLG TFLSVHRNEI PNGVSKEARL APNLERKLQA LDPGSYLNPR  120
KRAVEEARQI FNIDSSSSSS DQNEDEKSSR RRSPEQEEEA VEEKHYGNAQ DRIHSMSIDD  180
LRSLLVHNTT TTTNPVDSVN ITRSRENAST DVDLARRMRG NRRDSSTDQR LPRGRPPGTS  240
IPRQQLPMGE IVEVEGGHIV RSTGRKDRHS KVYTAKGPRD RRVRLSALTA IQFYDVQDRL  300
GFDRPSKAVD WLIKKAKTSI DELTQLPSRS ALNIPNQEPK AEDEGIKEQA EQEIQMHNEA  360
AAKSGARATD SRAIARERAR ERAKERIQER SDAVAKAQNQ TYLRPRDHLF SLNPASTSPT  420
VPNFATGSNT ANPQMGMHSI TAGAVPANSE AAQNPNQQTN QSLFSSSTAS AFQVPPGFRR  480
EIVMPEQLHH ESFSSQSQPH RILSAPPMWN YNSINADFGN SNTNNIAVLA PNMLRGGGHY  540
SSFTTRGTLQ SSSSPVRVRS NSPLPADHCP QTGGGFSGFR IPARIQGIDE NDDLDIGTAK  600
GRSRADKSLF DPAQRHPGGE KSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-19270323154Putative transcription factor PCF6
5zkt_B2e-19270323154Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00062PBMTransfer from AT3G15030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1142771e-129BT114277.1 Picea glauca clone GQ03511_M08 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-43TCP family protein