PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00026987-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 526aa MW: 59145.9 Da PI: 5.8398

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00026987-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.7	7.1e-15	77	121	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+++++da k++G W+ I +++g ++ + q++s+ qk+ PSME_00026987-RA 77 RERWTEDEHKKFLDALKLYGRS-WRHIEEHIG-TKRAVQIRSHAQKF 121 78****************55.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.54E-14	71	127	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.48	72	126	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-7	74	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-15	75	124	IPR006447	Myb domain, plants
SMART	SM00717	3.2E-11	76	124	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-12	77	120	IPR001005	SANT/Myb domain
CDD	cd00167	1.11E-8	79	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MEFLQPRRKS KTYDKADQDL AVSAVRTFSV SSYVRGDVIE TVEEGENLFS IDEPLLKFSL 60 LSLLDQVRKP YTITKQRERW TEDEHKKFLD ALKLYGRSWR HIEEHIGTKR AVQIRSHAQK 120 FFTKLEKGAS TGTNSTMTDQ YLEIPPPRPK RKPGHPYPKK TGVICRGGDL SVAEEDSLTR 180 GCEVSDISAA TLDGERECSK LTELAQHNSK SRPFYKPEMT QGTLQPSLMS TSLKLFGRTL 240 VVQNSFTDDF LITSVKNEAI CSEIYAENKD APCEDGILDC RRIRKDTFSP EESETDTIQS 300 VNNSTGRSTI NKSSVFSNTN WSSALLNSCH SSSSEDEKIQ SSYPQVLRDG SLEVGLQQKP 360 EAPEVKGKYT DQSKEEEERQ RNKSLMQLQN KIGLQAQPWT LDAGEIISNV SHNYKMPHPG 420 NIVLQSNLSP TPLTEGCSFK MASASQSSDG DPFKEECSMT FHHSETSVDS ISDFQILHDM 480 SSIGSMLCSK SRGENRTYSG EGFVPYKRCQ IDGQSPRESD NEEYNL

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MEFLQPRRKS KTYDKADQDL AVSAVRTFSV SSYVRGDVIE TVEEGENLFS IDEPLLKFSL  60
LSLLDQVRKP YTITKQRERW TEDEHKKFLD ALKLYGRSWR HIEEHIGTKR AVQIRSHAQK  120
FFTKLEKGAS TGTNSTMTDQ YLEIPPPRPK RKPGHPYPKK TGVICRGGDL SVAEEDSLTR  180
GCEVSDISAA TLDGERECSK LTELAQHNSK SRPFYKPEMT QGTLQPSLMS TSLKLFGRTL  240
VVQNSFTDDF LITSVKNEAI CSEIYAENKD APCEDGILDC RRIRKDTFSP EESETDTIQS  300
VNNSTGRSTI NKSSVFSNTN WSSALLNSCH SSSSEDEKIQ SSYPQVLRDG SLEVGLQQKP  360
EAPEVKGKYT DQSKEEEERQ RNKSLMQLQN KIGLQAQPWT LDAGEIISNV SHNYKMPHPG  420
NIVLQSNLSP TPLTEGCSFK MASASQSSDG DPFKEECSMT FHHSETSVDS ISDFQILHDM  480
SSIGSMLCSK SRGENRTYSG EGFVPYKRCQ IDGQSPRESD NEEYNL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085534	0.0	EF085534.1 Picea sitchensis clone WS02728_K17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NW27	0.0	A9NW27_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	1e-30	MYB_related family protein