PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026936-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 201aa    MW: 23149.4 Da    PI: 6.2415
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026936-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-15881711197
                       HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++sg +++p  f++++ +g++     +t+ed +g sW+++   y ++++r v+t+GW+eF+++++ k+gD+++ +  +++ f  +v+++
  PSME_00026936-RA  88 GRSGKMSFPVMFMTKYlSGSQ---GIVTFEDCDGHSWRIEWyAYLQSGRRLVFTTGWSEFASDHNAKDGDILLVEILNSEHF--KVQIL 171
                       67899***********74442...36**************9456999999*************************7766777..77765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-1973171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-1874171IPR015300DNA-binding pseudobarrel domain
CDDcd100177.66E-1776172No hitNo description
SMARTSM010195.5E-978174IPR003340B3 DNA binding domain
PROSITE profilePS5086312.04178174IPR003340B3 DNA binding domain
PfamPF023623.6E-1488171IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
IYFYNGSNSK LESNMETRAQ VIWTGESWLF VDNETSKMGT EGSFKNRYKP HVGEGLLSPN  60
REMVTDFVKD IFTEHPSFAR TIQRKCLGRS GKMSFPVMFM TKYLSGSQGI VTFEDCDGHS  120
WRIEWYAYLQ SGRRLVFTTG WSEFASDHNA KDGDILLVEI LNSEHFKVQI LPGEICMAIK  180
ENTALGCMRE VGFLEFFHYM L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-08related to vernalization1 1