PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00026688-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 74aa MW: 8674.01 Da PI: 10.0208 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3e-08 | 36 | 73 | 1 | 37 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtl 37 +g W+++Ed +l ++v + G +W+ +a+ gk+R+l PSME_00026688-RA 36 KGLWSPDEDHKLTNYVMRKGLTgCWNYVAKQAGKHRSL 73 678*****************999**********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.864 | 31 | 72 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-9 | 32 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.21E-6 | 32 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.0E-6 | 36 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MKENRSGEMW FTVRKDQEVW EMEGVPPTPS IPKLRKGLWS PDEDHKLTNY VMRKGLTGCW 60 NYVAKQAGKH RSLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 8e-11 | myb domain protein 83 |