PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026686-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 472aa    MW: 52765.7 Da    PI: 6.7551
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026686-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.3e-132674148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g W+++Ed +l++++   G   +W+ +a+  g +R++k+c++rw++yl
  PSME_00026686-RA 26 KGFWSPDEDNKLINYIMTKGLSrCWSYVAEQAGVKRCGKSCRLRWLNYL 74
                      688*****************889**********99************97 PP
2Myb_DNA-binding41.14.3e-1384122545
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       ++ E++ ++++  +lG++ W+ Ia++++ gRt++++k++w+
  PSME_00026686-RA  84 SQKEEQVIIHLQSRLGNR-WSQIAAKLP-GRTDNEIKNHWN 122
                       899***************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.1392174IPR017930Myb domain
SuperFamilySSF466892.97E-2424121IPR009057Homeodomain-like
SMARTSM007172.5E-92576IPR001005SANT/Myb domain
PfamPF002497.8E-122774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-202981IPR009057Homeodomain-like
CDDcd001677.67E-82974No hitNo description
PROSITE profilePS5129422.45875129IPR017930Myb domain
SMARTSM007171.2E-1179127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2282129IPR009057Homeodomain-like
PfamPF002494.8E-1184123IPR001005SANT/Myb domain
CDDcd001674.91E-984122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MRCATGLRPQ GEAGVPSNPS KPKLTKGFWS PDEDNKLINY IMTKGLSRCW SYVAEQAGVK  60
RCGKSCRLRW LNYLRPGLKR HAISQKEEQV IIHLQSRLGN RWSQIAAKLP GRTDNEIKNH  120
WNSSIKKKLM LKHERPFSSI AADRNTNSKS GILFQSDRIC DDNSVPGDFH DVVTPSHSAQ  180
QCFELVPVPE EGYQPHNSTF NVLLATRDNQ VCVPDVLGLK QEQAVQDQSD DVLINPEPTY  240
NQLISYSQLL NNADSTHTDE SFFTHTAFMS PSLQAQGLHN YNAAKSSTCD ELIIESWGTP  300
VPPDEAPGSA HNYSLGLIGF NNIPALVESQ PFKVKTQNDR QINKNEIKID YSSFTSSPRV  360
NAWSAGHSYS NTAAGSTYVS TDVYPFRVKT QNERQINKNE IMIDYSSFTS SPGVNAWSAG  420
HSYSNIAAGS TDVYPVVSYN DHDHELLGIR ILEDHVNRHK SYPLPDIEGE LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26221293108B-MYB
1h8a_C7e-262212923128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150087e-48BT115008.1 Picea glauca clone GQ03607_C13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE84e-87A5JYE8_PICGL; R2R3-MYB transcription factor MYB4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.11e-48myb domain protein 83