PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026563-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 243aa    MW: 27967.8 Da    PI: 9.2095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026563-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-111461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed+ l ++++ +G   W+  +++ g +R +k+c++rw +yl
  PSME_00026563-RA 14 RGAWTAKEDKFLSEYIRIHGDAGWTNLPKKAGINRRGKSCRLRWVNYL 61
                      89*******************9**********99************97 PP

2Myb_DNA-binding537.7e-1767112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E+el+++ +++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00026563-RA  67 RGNISPDEEELIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                       7899******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.762961IPR017930Myb domain
SuperFamilySSF466892.71E-2612108IPR009057Homeodomain-like
SMARTSM007172.7E-91363IPR001005SANT/Myb domain
PfamPF002496.6E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-201568IPR009057Homeodomain-like
CDDcd001679.50E-71661No hitNo description
PROSITE profilePS5129426.7162116IPR017930Myb domain
SMARTSM007179.4E-1766114IPR001005SANT/Myb domain
PfamPF002493.9E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2669116IPR009057Homeodomain-like
CDDcd001674.88E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAISPCCSKE GLSRGAWTAK EDKFLSEYIR IHGDAGWTNL PKKAGINRRG KSCRLRWVNY  60
LRPDIKRGNI SPDEEELIIR MHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HLKKKLLMNK  120
RQDEMHNIKA RADSRLTLQN GVIKTTPVKI TAAVRHYEMV TPNRGSNIGN SDHPFKICNI  180
QETIYGLLMS CFDLFVNDSI PEDDSERLAF RREDANIAET EEDKQSLHHS DHLFDSIKLS  240
SPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25121165108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204546.17e-66transcription factor MYB6
RefseqXP_008242211.17e-66PREDICTED: anthocyanin regulatory C1 protein-like
SwissprotQ9S9K94e-58MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A167V9011e-88A0A167V901_PICAB; Transcription factor MYB30
STRINGXP_008242211.13e-65(Prunus mume)
STRINGEMJ057453e-65(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-60myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]