PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026549-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 448aa    MW: 50083.1 Da    PI: 6.1478
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026549-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.5e-1253109155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d +++n+ ++k+ + g ++ +e Aa a++ a++k++g
  PSME_00026549-RA  53 SIYRGVTRHRWTGRYEAHLWDkYCWNQsQSKKGRQGAYDDEEAAAHAYDLAALKYWG 109
                       57***********************9998888888********************98 PP
2AP251.52.5e-16152203155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  PSME_00026549-RA 152 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDMAAIEYRG 203
                       89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.1E-853109IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-1553119IPR016177DNA-binding domain
PROSITE profilePS5103218.47954117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-1254118IPR001471AP2/ERF domain
SMARTSM003807.8E-2054123IPR001471AP2/ERF domain
PRINTSPR003674.6E-65566IPR001471AP2/ERF domain
CDDcd000182.02E-15152213No hitNo description
SuperFamilySSF541711.31E-17152213IPR016177DNA-binding domain
PfamPF008477.9E-12152203IPR001471AP2/ERF domain
PROSITE profilePS5103218.439153211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-18153212IPR001471AP2/ERF domain
SMARTSM003802.0E-25153217IPR001471AP2/ERF domain
PRINTSPR003674.6E-6193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEAINRSFTS SSSFAMKNVA AAEEIDGENT PSAPKAKRSR NSVRRDTPPK RSSIYRGVTR  60
HRWTGRYEAH LWDKYCWNQS QSKKGRQGAY DDEEAAAHAY DLAALKYWGQ ETVLNFPIST  120
YTKEVEEMKD LSKEEYVGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY  180
LGTYSTQEEA AAAYDMAAIE YRGMNAVTNF DLSRYIKWLR PDAAQSNNTA TATPADKELN  240
FLPSINISKS SNNIQEHEVH EPEPEQNQIH ESQDRQAVSS SLEQLQQATM GQTTRNGNGQ  300
ASTALGLLLQ SSKLKEMLER STMVDTSGTS CAPDRAGLDY SQSKQQADTS AYSEDMDSLF  360
QSSDYIFNQS HEEYMQSLLG PSNNNMMMNM LQASAVPNTS YDQMQFQTFC SNADLMDHAS  420
LIDLMSSTTN SSGSSLIPFG MDMGSSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022016792.11e-134AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A251RVZ71e-133A0A251RVZ7_HELAN; Putative ARIA-interacting double AP2 domain protein
STRINGXP_009793520.11e-132(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.19e-88ARIA-interacting double AP2 domain protein