PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026525-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 872aa    MW: 96694.1 Da    PI: 6.6501
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026525-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.4e-1746106257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R+++++eq+++Le+ F + + +p +ee++++ ++l    ++ + +V++WFqNr+ + k+
  PSME_00026525-RA  46 KPRWNPKPEQIQILESIFTSgTVNPAREEIKRIRAQLevfgQVGDVNVFYWFQNRKSRSKR 106
                       89*****************99**************************************97 PP
2NAM101.41.2e-3157264554128
               NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ewyfFs++d+ky++g+r+nrat++gyWk+tgkd+++++ +++++g+kktLv+y+grap+ge++dWvmhey+l
  PSME_00026525-RA 572 TNMEWYFFSPHDRKYPNGSRTNRATEDGYWKSTGKDRKIYT-RESTIGIKKTLVLYRGRAPQGEQSDWVMHEYHL 645
                       566**************************************.8899****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-729107IPR009057Homeodomain-like
SuperFamilySSF466891.45E-1141108IPR009057Homeodomain-like
PROSITE profilePS5007111.38642107IPR001356Homeobox domain
SMARTSM003891.3E-644111IPR001356Homeobox domain
PfamPF000462.4E-1546106IPR001356Homeobox domain
CDDcd000863.05E-746107No hitNo description
PROSITE profilePS5100529.049519672IPR003441NAC domain
PfamPF023651.4E-14570645IPR003441NAC domain
SuperFamilySSF1019412.09E-30571650IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MFLKSNSLTP SGNQLPETWK SAPYSGTGEL SHNYKLERES SPPKAKPRWN PKPEQIQILE  60
SIFTSGTVNP AREEIKRIRA QLEVFGQVGD VNVFYWFQNR KSRSKRKPRL PAAQRTKARA  120
QSGTQSSTST SRSASVQTKT IPDLSDSPAS SMQTNIGNQY RSSPVPISEF AGHHYDIRGV  180
YEEMNKASSV PSQTFTALLN SPLNPMPNKL QNQYSSYSSV PVPSFAGHNY DQQAVPSQTF  240
TGFRNNPPNY MDSHGRDQYC SSSTVPVASS TENLYGHERL YEEMSKTSTF DQSKSIADVA  300
NIRPNPMQGH IPDQYFSSSA LPVSSTAGQM TFDQCNTIAD VANIQPNPMY SHIPDQYFSS  360
SALPVSSSAG QIQDLESLFE EMSKTSSPVR SQTITDLPNI LPTSMKSNVQ AQYCSCSALR  420
LPSPAEELND LDRLLEEMIN FDELNNMQAA GTGEAGGGQS VLNEGTGTVQ DGSIINSNVT  480
LISVLINDAQ ITVPSSPINF RDFFGDNALL FHSSGEPVLV NEFGFTSLEH GAMYFMAYGI  540
HKSSTPLKLL CGRLEIHKGI GTHEGKYFMP NTNMEWYFFS PHDRKYPNGS RTNRATEDGY  600
WKSTGKDRKI YTRESTIGIK KTLVLYRGRA PQGEQSDWVM HEYHLKENGC EVGPCLQVGG  660
RNTILVDTLS RRMRLVSDKP TIIFLADVTL PHPGEDSSPS IATFHELIED HGKYGIVSML  720
EVHECNDIEK MGKQDVDVYF DPNAPYSSSM DDVPLKVLFG VPNVKMRQSP TQEKKTVQID  780
LSSPKEDTTD SRPPNDIAIR CLEKLSTGTR AIASAISSAW RYALDHRHTF TSKDIYFHYP  840
PVLPGGTGTE EKEAHRRSPP LTPCDRGLVG VP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-2757564570140Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108RSKRKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0848195e-84EF084819.1 Picea sitchensis clone WS02811_I19 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.15e-35NAC domain containing protein 57