PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00026513-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NF-YC | ||||||||
Protein Properties | Length: 239aa MW: 26661.7 Da PI: 10.6139 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 125 | 2.9e-39 | 53 | 142 | 12 | 101 |
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 ++dfknh+ Pl+rikki+kadedv +is eaP+l++kace+file+tl sw+h+ee+k r l+k+dia a+trt ifdf + i+pr el PSME_00026513-RA 53 VVNDFKNHQKPLTRIKKIMKADEDVFIISVEAPILFAKACEMFILEFTLCSWNHTEEKKWRMLQKNDIAGAITRTGIFDFPMHIMPRGEL 142 579***********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.03E-20 | 47 | 132 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.1E-27 | 55 | 125 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.8E-14 | 63 | 124 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSFFRHNRAI RTKYCRKACL RAIRVKQLLP LHLWACKGRW DSSHRRSQVS ARVVNDFKNH 60 QKPLTRIKKI MKADEDVFII SVEAPILFAK ACEMFILEFT LCSWNHTEEK KWRMLQKNDI 120 AGAITRTGIF DFPMHIMPRG ELKEEGLGLG FSKGGIPLEG NGWLPFRHDG KTLSNSSRPI 180 GHVYVATTGT SLWNATSSSP AHVVASSTSS SSIATATSTN AGWTNLWESA LAAPTPHAG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-40 | 56 | 139 | 12 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_006493757.1 | 3e-44 | (Citrus sinensis) | ||||
STRING | XP_006422281.1 | 3e-44 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 1e-40 | nuclear factor Y, subunit C4 |