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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00026454-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | NAC | ||||||||
| Protein Properties | Length: 271aa MW: 30271.7 Da PI: 6.8809 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 44.7 | 4.1e-14 | 1 | 48 | 84 | 128 |
NAM 84 katgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
katg+dk++l++ ++++vg+kk Lvfy gr kg kt+W+mhey l
PSME_00026454-RA 1 KATGTDKPILTStsgGTQKVGVKKALVFYGGRPAKGIKTNWIMHEYCL 48
79********998888899***************************87 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 1.26E-18 | 1 | 79 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 24.386 | 1 | 78 | IPR003441 | NAC domain |
| Pfam | PF02365 | 2.4E-5 | 15 | 48 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 271 aa Download sequence Send to blast |
KATGTDKPIL TSTSGGTQKV GVKKALVFYG GRPAKGIKTN WIMHEYCLAD SGARPSSFPN 60 KKGSLRLDDW VLCRIYKKNG HSQRVQGAKR DESPSADEVM TSLPNIEQQN KLQLPKLGPF 120 SGLLETDDPF IEGLLNDEAM DGNGNISILP HQVHSSDLSH NNFSNSNDNN SDCQFEVVPK 180 QEALAVDNEN KFNSLKRTLS LAAFGDEEIH SAKRFNEMQN NYSYNVNNNV SALLNSMQPN 240 QTFQQQNFLS ALSDSQQNFR FPYIQNMHWI S |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 3swm_A | 1e-21 | 1 | 84 | 102 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-21 | 1 | 84 | 102 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-21 | 1 | 84 | 102 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-21 | 1 | 84 | 102 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-21 | 1 | 84 | 102 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-21 | 1 | 84 | 102 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-21 | 1 | 84 | 102 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-21 | 1 | 84 | 102 | 174 | NAC domain-containing protein 19 |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT111167 | 1e-168 | BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence. | |||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G15510.1 | 1e-30 | NAC domain containing protein 2 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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