PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00026106-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 8818.74 Da PI: 5.0629 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.8 | 5.2e-08 | 7 | 50 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT +++ a + + ++ +W+ +a+++ g++++++k ++ PSME_00026106-RA 7 SWTSKQNKQFETALAVHDKDtpdRWHNVASMVD-GKSPEEVKKHY 50 6********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.0E-6 | 4 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-6 | 7 | 50 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.51E-12 | 7 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.94E-6 | 7 | 54 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 7 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.098 | 7 | 54 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MAGQSASWTS KQNKQFETAL AVHDKDTPDR WHNVASMVDG KSPEEVKKHY EILLEDLDCI 60 EAGQVPYPNY KSEASRNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-31 | 3 | 72 | 6 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT113498 | 2e-62 | BT113498.1 Picea glauca clone GQ03411_B22 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021680636.1 | 7e-33 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 2e-31 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | D5ADC1 | 3e-33 | D5ADC1_PICSI; Uncharacterized protein | ||||
STRING | XP_010690864.1 | 1e-31 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 4e-32 | RAD-like 6 |
Publications ? help Back to Top | |||
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