PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00026073-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 383aa    MW: 42575.6 Da    PI: 5.8772
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00026073-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19283317135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs+C++ kTp+WR gp g+ktLCnaCG+++++ +l
  PSME_00026073-RA 283 CSHCHVQKTPQWRAGPLGPKTLCNACGVRFKSGRL 317
                       *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-16277327IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.451277313IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15278340No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14281315IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.83E-15282339No hitNo description
PfamPF003203.8E-17283317IPR000679Zinc finger, GATA-type
PROSITE patternPS003440283308IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MNLLKNKTTV FLLTLIPHGL FFNSAHCARS APPVLIPPSP SPHILTHAVR SPWSPSFQMA  60
LSMDYPTGTS QHIESETWGA IGEAFHIDDL LDFSNDDIGA PIENDEENTS EFTEVSAGSV  120
ERNNYSSITQ VTEELELPAA ELCVPMDTLA DLEWLSTFVE DSFMPELSPV CRPASELVLS  180
TDRNKTELDD NDETKPQYGQ EDIFFNTCKW ITVKARSKRS RSGGRVWSHS PLLPPNPGFE  240
SHGLVFSLYS DSSCSDSSQP RPAKKHKKTC SKKAHDGSQP RRCSHCHVQK TPQWRAGPLG  300
PKTLCNACGV RFKSGRLVPE YRPAISPTFL SEVHSNSHRK ILEMRRQKEE EEPKSEISCL  360
TSSDEGKESY SDNSLPSQVS VTA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QSG14e-84A0A0D6QSG1_ARACU; GATA transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-37GATA transcription factor 4