PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00025861-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | NAC | ||||||||
Protein Properties | Length: 235aa MW: 26604.9 Da PI: 10.4676 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.8 | 6.4e-51 | 36 | 162 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrF Ptdeelvv+yL+kk++++ +++ +i+evd+yk++Pw+Lp+k+ +ekewy F++rd+ky++g+r++r + sgyWkatg dk++ + PSME_00025861-RA 36 PPGFRFFPTDEELVVHYLCKKAASQIIHV-PIIAEVDLYKYDPWQLPNKALFGEKEWYLFTPRDRKYPNGSRPKRDAGSGYWKATGADKPINA 127 9**************************99.88***************8888899*************************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k +++ vg+kk Lvfy g+apkg+kt+W+mhey+l PSME_00025861-RA 128 KgGKKRVGIKKALVFYAGKAPKGSKTNWIMHEYHL 162 966777****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-56 | 29 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.527 | 35 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.8E-26 | 36 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGGIKGLGTI RVAIHLEELC KQARDHCALL VHNQWPPGFR FFPTDEELVV HYLCKKAASQ 60 IIHVPIIAEV DLYKYDPWQL PNKALFGEKE WYLFTPRDRK YPNGSRPKRD AGSGYWKATG 120 ADKPINAKGG KKRVGIKKAL VFYAGKAPKG SKTNWIMHEY HLADLSRPTR KKGSLRLIGL 180 FAILGHKSCV TAWEVELTLK VVYARWRASR MFQDAKQNRL DTTNGSAIFG HHPVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-70 | 30 | 177 | 15 | 157 | NAC domain-containing protein 19 |
3swm_B | 1e-70 | 30 | 177 | 15 | 157 | NAC domain-containing protein 19 |
3swm_C | 1e-70 | 30 | 177 | 15 | 157 | NAC domain-containing protein 19 |
3swm_D | 1e-70 | 30 | 177 | 15 | 157 | NAC domain-containing protein 19 |
3swp_A | 1e-70 | 30 | 177 | 15 | 157 | NAC domain-containing protein 19 |
3swp_B | 1e-70 | 30 | 177 | 15 | 157 | NAC domain-containing protein 19 |
3swp_C | 1e-70 | 30 | 177 | 15 | 157 | NAC domain-containing protein 19 |
3swp_D | 1e-70 | 30 | 177 | 15 | 157 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268987.1 | 3e-77 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 7e-76 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0D6R3P9 | 3e-87 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | XP_010268987.1 | 1e-76 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 3e-78 | NAC family protein |