PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025751-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 409aa    MW: 43731.5 Da    PI: 7.5274
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025751-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.6e-181964147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEd  l ++v+++G+++W+ I+r ++ gR++k+c++rw + 
  PSME_00025751-RA 19 KGPWSPEEDAALHKLVEKYGPRNWSQISRGIP-GRSGKSCRLRWCNQ 64
                      79******************************.***********985 PP
2Myb_DNA-binding55.31.5e-1773115347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++++ Ed  +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  PSME_00025751-RA  73 PFSPHEDNTIIQAHARHGNK-WATIARLLP-GRTDNAIKNHWNST 115
                       89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.4571469IPR017930Myb domain
SuperFamilySSF466893.71E-3217112IPR009057Homeodomain-like
SMARTSM007172.6E-171867IPR001005SANT/Myb domain
PfamPF002493.3E-171964IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-252072IPR009057Homeodomain-like
CDDcd001674.64E-162163No hitNo description
SMARTSM007177.5E-1570118IPR001005SANT/Myb domain
PROSITE profilePS5129419.92871120IPR017930Myb domain
CDDcd001675.91E-1273116No hitNo description
PfamPF002499.1E-1573115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2373119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGVPKDEAAV AMAVAERIKG PWSPEEDAAL HKLVEKYGPR NWSQISRGIP GRSGKSCRLR  60
WCNQLSPQVE HRPFSPHEDN TIIQAHARHG NKWATIARLL PGRTDNAIKN HWNSTLRRRY  120
HGDKEQSNGL VVNLESVAED KETMTPLTAT ATATTPALVF PTATDNGRKR STSSCSANDN  180
PGDAEVESRR LKKLNFAESP SSSDNNNSIE TDHCNSTVPG SSPGPQLHRP VPRQSAFNCY  240
EAVKMQEEAS ASASVSVSVS GSAGAFDPPT SLSLSLPGSV SSSENNSSGE CSPIEQSSET  300
KSAKIQAFQQ PTGFSFANPF PVSGYLKTEE AMAMMSAAVK MAIGQALPLI FQLPSGNSHG  360
GCSSDSANFG GSLLSIMREM IAKEVQNYTN GSQCSNQGSG FNSVASVFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-41161191104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167191RKRSTSSCSANDNPGDAEVESRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LM220.0B8LM22_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.14e-58myb domain protein r1