PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025688-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARR-B
Protein Properties Length: 227aa    MW: 25659 Da    PI: 5.222
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025688-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.52.2e-26163213152
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                       kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ+
  PSME_00025688-RA 163 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKRILELMHVQGLTRENVASHLQM 213
                       79*******************.*****************************8 PP

2Response_reg59.22.3e-2028626109
                       EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
      Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                       v+++  +++al +l+ek+  +Dl++ D+ mp+mdG++ll++   e  +lp+i+++a g  +++ + +k Ga d+l Kp+  eel +
  PSME_00025688-RA   2 VTTCCRATAALSMLREKKgaFDLVISDVYMPDMDGFKLLEHVGLEM-DLPVIMMSADGGTSTVMKGIKHGACDYLIKPVRLEELKN 86 
                       789999********999999**********************6644.8***********************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011034.333192IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363922.1E-1191213IPR017053Response regulator B-type, plant
SMARTSM004484.7E-7188IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.50E-21292No hitNo description
SuperFamilySSF521721.85E-262100IPR011006CheY-like superfamily
PfamPF000725.2E-17286IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.7E-322116No hitNo description
Gene3DG3DSA:1.10.10.601.4E-26160214IPR009057Homeodomain-like
SuperFamilySSF466891.79E-16161214IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23163213IPR006447Myb domain, plants
PfamPF002491.1E-6165213IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVTTCCRATA ALSMLREKKG AFDLVISDVY MPDMDGFKLL EHVGLEMDLP VIMMSADGGT  60
STVMKGIKHG ACDYLIKPVR LEELKNIWQH VIRKKRNEPK DFDHSGSFED NDRHRKGSED  120
VDYASSVNEG TDGSWKLLKK RKEAKEEEDD GEEDNDDPSA SKKPRVVWSV ELHQQFVNAV  180
NQLGIDKAVP KRILELMHVQ GLTRENVASH LQMVDMTDTD SNKSEQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-18159212154ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141KLLKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0823410.0EF082341.1 Picea sitchensis clone WS0277_N09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849799.11e-125two-component response regulator ORR21 isoform X1
RefseqXP_011625385.11e-125two-component response regulator ORR21 isoform X2
SwissprotA2XE314e-97ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S74e-97ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A0D6R4K91e-127A0A0D6R4K9_ARACU; Uncharacterized protein
STRINGERN113801e-125(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-83response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]