PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025482-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 212aa    MW: 23881.9 Da    PI: 10.2573
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025482-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.35.4e-48541802128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       ppGfrF  tdeelvv+yL+kkv+++ +++  +i+evd+yk++Pw+Lp k   +ekewy F+++d+ky++g+r++ra+ sgyWkatg dk++ +
  PSME_00025482-RA  54 PPGFRFFRTDEELVVHYLCKKVASQIIPI-PIIAEVDLYKYDPWKLPDKSLFGEKEWYLFTPHDRKYPNGSRPKRAAGSGYWKATGADKPINA 145
                       9****************************.88***************7777799*************************************** PP

               NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k +++ vg+kk L fy g+apkg kt+W+mheyrl
  PSME_00025482-RA 146 KgGKKRVGIKKALFFYAGKAPKGLKTNWIMHEYRL 180
                       966777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-5347182IPR003441NAC domain
PROSITE profilePS5100550.54653205IPR003441NAC domain
PfamPF023654.4E-2354180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
DGNSWSSLCK KIPSSLCVMG GIKGLGTIRV AIHLEELCMQ AKDHCALLVH NQWPPGFRFF  60
RTDEELVVHY LCKKVASQII PIPIIAEVDL YKYDPWKLPD KSLFGEKEWY LFTPHDRKYP  120
NGSRPKRAAG SGYWKATGAD KPINAKGGKK RVGIKKALFF YAGKAPKGLK TNWIMHEYRL  180
ADVSRPARKK GSLRVSWSIS SLLCFESAVL TT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-675418016140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792530.19e-78NAC domain-containing protein 2-like isoform X1
SwissprotQ52QH41e-74NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A0D6R3P91e-86A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGXP_008792530.14e-77(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-75NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]