PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025430-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 279aa    MW: 31544.4 Da    PI: 9.5694
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025430-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13158202655
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        ++Er+RR+  N+++ +Lr l+P+ +      K++Ka+i+  A++YI+sLq
  PSME_00025430-RA 158 VAAERKRRRIANEWLMTLRALVPNiS------KMDKASIVSDAIDYIQSLQ 202
                       589*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16155218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-11158202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-15158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-15159219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-11159206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MLLDDFEDSL FTPSTEIFGF PRLESSGSTI NMNSVPESED RWSLMSRKCS SQLSYNSWTN  60
LQQFSSDENY APVINHTYKS NKNVLNLRST FQNSEPASEQ YNVVVKDIGR GSKRKSSMLI  120
TQNELGQYTS SSAVKVSNIA YQGGRASAQE LSWASRNVAA ERKRRRIANE WLMTLRALVP  180
NISKMDKASI VSDAIDYIQS LQKQIKKTEV DVSALRSDIL QYSGSSTKQL ISSSTIEFTK  240
SHAQQGFKIL EVEKWRSMQE NQIKKIIVEA VSKYGFQEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165RKRRR
2162166KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-17bHLH family protein