PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00025120-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NF-YC

Protein Properties

Length: 331aa MW: 37430.1 Da PI: 6.2842

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00025120-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	149	9.3e-47	7	95	14	102
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 t+fk+h+lPlarikki+k+dedvkmisaeaPvl+skacelfileltlrswlh+eenkr tl+++dia a++r d+ dfl+divprde+k PSME_00025120-RA 7 TEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRCTLQRNDIAGAISRGDVLDFLLDIVPRDEVK 95 79************************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.19E-28	8	100	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.9E-35	8	76	IPR009072	Histone-fold
Pfam	PF00808	3.7E-19	13	76	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MFILFLTEFK QHQLPLARIK KIMKSDEDVK MISAEAPVLF SKACELFILE LTLRSWLHTE 60 ENKRCTLQRN DIAGAISRGD VLDFLLDIVP RDEVKEVDNG CTDYLPDTPD GFVEEPRIPE 120 KDIPPVELKQ IQHSGDPYSV WNTENLGLSY RFRELPKVLV KLGLIVLQDD EYGGHWPGIP 180 PAESMSYGGI HFPVMHAQPY HHNLNPHMMT AQQAMSQQLI PHQPLMPEQQ LMYQPPQGIV 240 DGDPAERFYT GAAYCPVGER SYTGSAYCPV GNHICSCRSE SPSCNDRSAL TAIRKRMLKV 300 LKLEDAYLKL TQIAKIPRWV RCISSPGSAL S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-44	7	91	11	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085083	1e-121	EF085083.1 Picea sitchensis clone WS0296_J03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NUT0	4e-52	A9NUT0_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-49	nuclear factor Y, subunit C2