PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00025116-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 327aa    MW: 36276 Da    PI: 7.2506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00025116-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11174222555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+ +Er+RRd+++   ++L +llP+ +  +++K + ++ L +A+++I++Lq
  PSME_00025116-RA 174 HKLVERQRRDKMKALCSTLISLLPEEF--RKTKHTISDKLLEAINHIRHLQ 222
                       99***********************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.131169221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-11173239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-10173236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-12174225No hitNo description
PfamPF000104.0E-8174222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-5175227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEDLLWTSYS DQYPYMARSS SYSQSAAFFT HFHGNTDTDD IQIETPTKSS KFMEPGTCVY  60
DDALATVVFD ALSTKRPHDY GMLGTASLGP VVQLDLTSAD DSSPPVTQCL QEFVGNFGDP  120
AQTLTCKSSA NSLLNSSNPL SPPTRSNRRK KAVAGGRGHD LEASADCIGN SDVHKLVERQ  180
RRDKMKALCS TLISLLPEEF RKTKHTISDK LLEAINHIRH LQAKLIELEK KRDEQKVTVK  240
PFFGSSSVFK TLQIAQVRPS NVRDKFQTIR VSKFGPAVQV TVNTFNNQIE FSSLLMVLEE  300
AEVDVVSATV SAINDRVFYS IHSKVIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.15e-18bHLH family protein