PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00025097-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 719aa MW: 80914.2 Da PI: 5.9199 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 323.8 | 3.4e-99 | 353 | 713 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++Ll+ A+ v+ g+le aqa+Larl++ +sp+g+++qR++ yf+eAL +++ + s+ s+ + +++++a k fse+sPi+ f+ PSME_00025097-RA 353 LQQLLDSAKYVELGSLEIAQAILARLNQYVSPRGKALQRATYYFKEALGGL-RP-LQQT---NSKSHLSPLQLVQKINACKNFSEISPIPYFA 440 689*********************************************863.22.2344...444555555599******************* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 ++taNq +lea+++ +++HiiDfd++ G+QW+++lq++asRp+gpp l +T+vg ++ e++ ++e+L fAe+l++pf f+v+ + e PSME_00025097-RA 441 NFTANQVLLEALATVDKIHIIDFDMGLGGQWASFLQEIASRPGGPPALTLTAVGY----ESMEMHLIRENLCIFAENLDIPFTFQVVEIPQNE 529 *******************************************************....99*************************9999*** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 dl+l++L++k+gE++aVn +l +h ll ++ s++ ++L+l+k+l Pk+vvvv++e + ++sF+++fleal++y+ lf+slea + + + PSME_00025097-RA 530 DLNLSMLNLKEGETIAVNYSLGMHGLL-SKDSIA----SILHLIKRLYPKIVVVVDHENEQLGSSFAQKFLEALHFYALLFESLEAV-HVNMD 616 **************************9.444444....5*********************************************887.67889 PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve....eesgslvlgWkdrpLv 368 + ++E+++++++i+nvv ++ ++ + + e+l +Wr+ +++ GF+p+ +s+++ kqa++l r+ + g+ e ++++ l+lgW+++ Lv PSME_00025097-RA 617 TIEMIEKFVMAPRICNVVEAAYKR-QREGENLPHWRSLFQAQGFTPMMISNFTHKQAESLSRNRQqRFGFCFEavkkQQEQILLLGWQRQVLV 708 999****************99985.888899*********************************97889876655544566677********* PP GRAS 369 svSaW 373 svSaW PSME_00025097-RA 709 SVSAW 713 ***** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.748 | 326 | 689 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-96 | 353 | 713 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 719 aa Download sequence Send to blast |
MLDRNTETRP PLLNLKLLQS NGIPAQANNK RTYIRSEYQS EPTSVLDIRS PSPTSTLSVS 60 FGGSTDGGFF RENACDGQLL DCIGVMDSKD GGSWQLQNVI RHDNEFQVTE TETVNVNPNV 120 SLGMEYLENI LLQSPESNHN SQIPCLMGEH FLMGNEYALP GIKAEEAVLQ HTQFNEPTDA 180 QLSEFLCGNP EMNPFTFIGD NVGHALSSFA LSTPSTAVFQ PSSALMTPNI HGPNPHPHSF 240 TPDFKPFKVP MDEKHPELQH PYGANPSYPE KNVVFPMPAA PRGHMGVAHE GFPDFEKSLH 300 WQQMQQREFQ PAWKTMMNRG VREPLFPPVK QEWPLRTHQG KIDMDEVQKS ALLQQLLDSA 360 KYVELGSLEI AQAILARLNQ YVSPRGKALQ RATYYFKEAL GGLRPLQQTN SKSHLSPLQL 420 VQKINACKNF SEISPIPYFA NFTANQVLLE ALATVDKIHI IDFDMGLGGQ WASFLQEIAS 480 RPGGPPALTL TAVGYESMEM HLIRENLCIF AENLDIPFTF QVVEIPQNED LNLSMLNLKE 540 GETIAVNYSL GMHGLLSKDS IASILHLIKR LYPKIVVVVD HENEQLGSSF AQKFLEALHF 600 YALLFESLEA VHVNMDTIEM IEKFVMAPRI CNVVEAAYKR QREGENLPHW RSLFQAQGFT 660 PMMISNFTHK QAESLSRNRQ QRFGFCFEAV KKQQEQILLL GWQRQVLVSV SAWNVNNVV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-39 | 360 | 714 | 26 | 378 | Protein SCARECROW |
5b3h_D | 6e-39 | 360 | 714 | 26 | 378 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ711055 | 0.0 | KJ711055.1 Pinus tabuliformis clone PtHAM2 HAM2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K0M6Y2 | 0.0 | A0A0K0M6Y2_PINTB; HAM2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00150.1 | 8e-63 | GRAS family protein |