PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00024743-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 447aa MW: 50575.1 Da PI: 5.3977 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+++Ede+l+++++++G g+W+ ++++ g+ R++k+c++rw +yl PSME_00024743-RA 14 RGLWSPDEDEKLINYITKYGYGCWSEVPEKSGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.7e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++ E++l+++++++ G++ W+ Ia++++ gRt++++k++w+++ PSME_00024743-RA 67 RGNFSPNEEKLIIHLHTMVGNR-WAYIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.88 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.17E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.39E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.399 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.9E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.81E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MGRHLCCNQQ KVKRGLWSPD EDEKLINYIT KYGYGCWSEV PEKSGLQRCG KSCRLRWINY 60 LRPDIRRGNF SPNEEKLIIH LHTMVGNRWA YIASHLPGRT DNEIKNYWNS WIKKKLAKAE 120 IISKNIEASK VHSNLPQFLF EQAATLGNDC KLLKTEMTTD GHAVPQSHDL RSKEKCETFP 180 LWDYKMINSS NTGNSLYGVE ESKTALTIDS LLIRTDSETG AIKEFNTCDP SSILINSSSK 240 NSDLQYILQR DNGLQVQDLP ASNTWHGYSS LNPIEGSFYF NPNSENSNGL HSTSSMNDSD 300 FMRSLDMVPL IYSQHETLDP TNHANVATLW ESGSSSNGVD LGYSECLYSA DQYNHGTENS 360 CSYLPPLYDA SEESAAIDIK HNENNSLRYL EQIQHNEINI AQEMDAIQQI FDCGEQNSNL 420 VTTIQYCMGS HSPVSDSHHP QDTFNLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-26 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF601065 | 0.0 | EF601065.1 Picea glauca R2R3-MYB transcription factor MYB2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A5JYE6 | 0.0 | A5JYE6_PICGL; R2R3-MYB transcription factor MYB2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 5e-74 | myb domain protein 103 |