PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024669-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 442aa    MW: 46782.2 Da    PI: 9.4722
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024669-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like49.21.1e-15741032655
           G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  PSME_00024669-RA  74 KAVPKRILELMNVQGLTRENVASHLQKYRL 103
                       8****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.1E-8973No hitNo description
PfamPF000721.3E-42064IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.85E-72273IPR011006CheY-like superfamily
CDDcd001564.39E-62373No hitNo description
Gene3DG3DSA:1.10.10.603.8E-1574108IPR009057Homeodomain-like
SuperFamilySSF466896.09E-874107IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1374103IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MQQSPHTNTS VVPGNLNMKD LKITSCGQEI TTLSLLRENR DKFDLVISDV YMPDMDGFKM  60
LELVGLELDL PVIKAVPKRI LELMNVQGLT RENVASHLQK YRLYLKRLSG VASQQSSMGN  120
AFGGGRESSF GSLCQVYGIG HLQVLAQSGH LSARALESLQ AGVLGRLNGS VGLGLPGLNS  180
SGMLQFSSLP GLGYNNSIGR AQGIALVNNP MNAFPCLSTG LELDQLQQKQ QIARLGDIGA  240
PMDDPTGFHT MQRQLTATNS SSVGLGGGSS GKISVHSTNN ALVLQLMQQQ QQKHGRGLTT  300
LTTERTISQR SGASDINMVM SSQLPNTNGN SGNWGNGATV SVLPTNARSV GGPLSSTGSG  360
VQNVREILLS ASNVDCMSMD ISVPPVNSLV GPSSHNIIPR NDLSLSSISA MNNSIGNISK  420
VVPSDNRRPN LPILGNMNTG LR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1031221e-116BT103122.1 Picea glauca clone GQ0206_O13 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RI593e-60A0A0C9RI59_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_18815_3529 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.14e-27response regulator 1