PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00024659-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 25273.1 Da PI: 5.2923 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 4 | 25 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W+tIa+ ++ gRt++++k++w++ PSME_00024659-RA 4 WSTIAAQLP-GRTDNDIKNYWNT 25 *********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.347 | 1 | 31 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.55E-7 | 4 | 35 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-11 | 4 | 31 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.32E-6 | 4 | 27 | No hit | No description |
Pfam | PF00249 | 3.4E-6 | 4 | 25 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDLWSTIAAQ LPGRTDNDIK NYWNTRLKKK VLLGNRKDCQ ARRLAVAKQE SNNEQSYAMS 60 EFITSASPNI YCSEQAKDMN IDMHVPYFNL GTEIISQMFE KNCGSTSITE SNSSSEPAPT 120 QSNHQQIQLD QEVFDHSSCL GELRRSPGEI RVDNPSNKNM AMISTSSPIQ AFNYINAAQV 180 QQSAVHHEYV SEAASHILYE TPSATPVLIR LADQREVAIL DQSTSL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ABB6 | 3e-53 | D5ABB6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 6e-15 | myb domain protein 68 |