PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00024656-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 59aa MW: 6703.76 Da PI: 7.1826 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.4e-09 | 14 | 46 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 +g+W++eEd +l+d++++ G+g +W + ++++g PSME_00024656-RA 14 KGPWSPEEDSKLKDYINKCGTGgNWLALPEKIG 46 79***********************98888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-10 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.36E-7 | 9 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.458 | 9 | 45 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.6E-7 | 14 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.83E-4 | 16 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence Send to blast |
MGRAPCCDND KMKKGPWSPE EDSKLKDYIN KCGTGGNWLA LPEKIGMAFF INLIEWFHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288285.1 | 2e-21 | PREDICTED: transcription factor RAX3 | ||||
Swissprot | Q9FKL2 | 4e-22 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A2J6KKG5 | 9e-21 | A0A2J6KKG5_LACSA; Uncharacterized protein | ||||
TrEMBL | A0A2P6RB18 | 5e-20 | A0A2P6RB18_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | evm.model.supercontig_129.59 | 9e-21 | (Carica papaya) | ||||
STRING | XP_004288285.1 | 6e-21 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-24 | myb domain protein 36 |
Publications ? help Back to Top | |||
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