PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024655-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 270aa    MW: 29839.9 Da    PI: 9.8701
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024655-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-0859832146
                      TT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqk 46
                        +W+ Ia+ ++ gRt++++k++w++
  PSME_00024655-RA 59 LCRWSIIAAQLP-GRTDNDIKNHWNT 83
                      557*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.0E-85690IPR009057Homeodomain-like
CDDcd001675.18E-65685No hitNo description
PfamPF002492.1E-66083IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-126089IPR009057Homeodomain-like
PROSITE profilePS500906.2726185IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEGSQKKKIA SFVASIIKLV AGSVVLISQR DSHVNDKQPF SRLKIVFVVM VWNMTLLPLC  60
RWSIIAAQLP GRTDNDIKNH WNTRLKKKLM GKRKDHQTRR VAAVSQEKKD VQSYGTTEAN  120
TCPNISGKQQ QPGGVDQQKN MGMNGLYSNF GTTGIITHLF EQNCGSGIAE SSSSSELVTF  180
QLNPQEFQID QELSDHNSCL RKLLQSLHEG SVFYHHSNKH MSMISTSSPV EPSNCINASQ  240
IPHSTXILGS GSCSKVFMKA VCLIITGTKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABB65e-79D5ABB6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-15myb domain protein 68