PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024440-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 308aa    MW: 34818.9 Da    PI: 9.6152
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024440-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.62.5e-361532732128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       ppGfrF Ptdeelvv+yL+kk++++ +++  +i+evd++k++Pw+Lp k+  +ekewyfF++ d+ky++g+r++ra+ s yWkatg d+++ +
  PSME_00024440-RA 153 PPGFRFFPTDEELVVHYLCKKAASQIIPV-PIIAEVDLHKYDPWKLPDKALFGEKEWYFFTPCDRKYPNGSRPKRAVGSRYWKATGADNPINA 244
                       8****************************.88***************8777899*************************************** PP

               NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k +++ vg+kk L        k+++   +mheyrl
  PSME_00024440-RA 245 KgGKKRVGIKKALHP------KAQRQIAIMHEYRL 273
                       9666779****9965......45555669****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-40146275IPR003441NAC domain
PROSITE profilePS5100535.765152300IPR003441NAC domain
PfamPF023658.8E-17153273IPR003441NAC domain
PROSITE profilePS510879.112173308IPR007474ApaG domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MLHLVAIKVF LAFSMDVHDL ALEVSIKVFL AFSMDVHDLA LEVSIKFFLA FSMDVHDLAL  60
EVSIKVFLAF SMDVHDLALE VSIKVFLAFS MDVHDLALED GNSWSSLCKK IPSSLCVMGG  120
IKGLGTIRVA IHLEELCKQA RDHCALLVHN QWPPGFRFFP TDEELVVHYL CKKAASQIIP  180
VPIIAEVDLH KYDPWKLPDK ALFGEKEWYF FTPCDRKYPN GSRPKRAVGS RYWKATGADN  240
PINAKGGKKR VGIKKALHPK AQRQIAIMHE YRLADVSRPA RKKGSLRGKY PVVLGKMGTF  300
RFLDENRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5415327316140Stress-induced transcription factor NAC1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-63NAC domain containing protein 32