PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024409-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 408aa    MW: 45294.5 Da    PI: 6.7422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024409-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10223270455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PSME_00024409-RA 223 SHSLAERVRREKISERMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 270
                       8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-17217288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-10217274No hitNo description
Gene3DG3DSA:4.10.280.103.0E-17219287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7223270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSVIMALEGN GNYVFDGLTN FNKVSANSTL NYQTSSAVWH SGISSCALNM NRQPLAEGSF  60
RALNSSYSLD DLLPFPVHGL DNANGGTHPQ NVKLVSEHSS QHNFFNSIRV QKPGIEVKCN  120
VSAEESSSSD QSTGGRKRRI LSNEASTVTS AGEKSTENES KSKRPKSAEA KKEKDDSKSD  180
AEQGTHIGKL QGNSKQSEQS AKPPEPPKDY IHVRARRGQA TDSHSLAERV RREKISERMK  240
LLQDLVPGCN KITGKAVMLD EIINYVQSLQ RQVEFLSMKL EAVNPRLDFN MEGFLTKDML  300
EPSDMRFTSD TTMAYPQFHQ PEWAAVQTGV SCEIEEQCLG NAREVALRRT MNENFPRIEG  360
YGDAKISNVW DDELQNVVLS GVGQNIQIPF KSQSLQGSFP TRHTIIEH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008809649.17e-81transcription factor bHLH78-like isoform X1
TrEMBLD5AB870.0D5AB87_PICSI; Uncharacterized protein
STRINGXP_008809649.13e-80(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.17e-58bHLH family protein