PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00024334-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 227aa MW: 26092.5 Da PI: 8.1525 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.5 | 2.6e-12 | 15 | 60 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+WT+ Ed +l +++ +G g+W+ +++ g++R++k+c+ rw y PSME_00024334-RA 15 GAWTKKEDMILSEYISIHGDGRWRNLPQKAGLRRSGKSCRIRWMHY 60 79*****************************************977 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.8e-14 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + + +el+++ +++lG++ W++Ia +++ gRt++++k++w+++l PSME_00024334-RA 67 RGNISDDAEELIIRMHRLLGNR-WSLIAGRLP-GRTANEVKNHWNTHL 112 566777779*************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.963 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.24E-24 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-11 | 15 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-19 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.64E-7 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.421 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-12 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-21 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-9 | 75 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MVRSTYCSKE GLNCGAWTKK EDMILSEYIS IHGDGRWRNL PQKAGLRRSG KSCRIRWMHY 60 HRPDIKRGNI SDDAEELIIR MHRLLGNRWS LIAGRLPGRT ANEVKNHWNT HLKKKLFMVP 120 DRCNNIDALK FCQIQETRNS SKTCCKLFVN DSMSEDYSER NIASRIMADA YNLAETEAGQ 180 QCLDSDHFAG NAAATVLEEL LFDSNKQSSP DCKQSYFSTG FELEDIF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027331892.1 | 9e-60 | myb-related protein Zm38-like | ||||
TrEMBL | A0A167V901 | 1e-67 | A0A167V901_PICAB; Transcription factor MYB30 | ||||
STRING | XP_004507986.1 | 1e-58 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-55 | myb domain protein 6 |