PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00024237-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | bHLH | ||||||||
Protein Properties | Length: 186aa MW: 21613.7 Da PI: 6.5253 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.9 | 0.00041 | 65 | 108 | 3 | 50 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 + +E+ RR+r++ +L +llP +Kl+ e+A++Y PSME_00024237-RA 65 GSQVVAEQLRRKRMKCLCTQLESLLPMT----TPKLDRCGLYEEAINY 108 566789********************96....3555555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-7 | 61 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.991 | 62 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.03E-7 | 63 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MAFHGFPSNS NSQQCTPPSQ ADCQVIASRK SPFEVDLDSL QELKDLQEIV WRDVDQMTIK 60 DTTRGSQVVA EQLRRKRMKC LCTQLESLLP MTTPKLDRCG LYEEAINYNT KLEEDLRQLK 120 RKRDRLLEIQ SGKTANKNID LKVAVEIYDR EVIISITGQR RPRYLWKILE ELETHGLDVE 180 NSQLFT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NYK8 | 1e-75 | A9NYK8_PICSI; Uncharacterized protein |