PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00023816-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LSD | ||||||||
Protein Properties | Length: 166aa MW: 18031.9 Da PI: 8.1504 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 40.3 | 5.2e-13 | 19 | 43 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+tlL+Y+rGA+sV+C++C V PSME_00023816-RA 19 CGHCHTLLMYTRGATSVQCSCCSIV 43 **********************877 PP | |||||||
2 | zf-LSD1 | 45.1 | 1.6e-14 | 57 | 81 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +L+YP+GApsV+CalC++V PSME_00023816-RA 57 CGNCFMTLMYPYGAPSVKCALCHFV 81 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.6E-11 | 16 | 45 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.2E-11 | 19 | 43 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.7E-10 | 54 | 84 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-13 | 57 | 81 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MFAVQYAVPP GAEMAQLICG HCHTLLMYTR GATSVQCSCC SIVNLAIEAN QVAHVNCGNC 60 FMTLMYPYGA PSVKCALCHF VTNVGQISNM RMPLLAQRPP AAATTAPTSS SAHPTRSQTQ 120 TVVVENPMTV DERGKMVSNL GTVGKYWFLN LSQQLKQIDS FKEINQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT071760 | 1e-150 | BT071760.1 Picea sitchensis clone WS0452_N14 unknown mRNA. | |||
GenBank | EF084706 | 1e-150 | EF084706.1 Picea sitchensis clone WS02727_J11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225697.1 | 7e-58 | PREDICTED: protein LSD1 | ||||
Swissprot | Q6ASS2 | 7e-46 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A9NTQ6 | 2e-68 | A9NTQ6_PICSI; Uncharacterized protein | ||||
STRING | XP_008225697.1 | 3e-57 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 5e-42 | lsd one like 1 |
Publications ? help Back to Top | |||
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