PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00023742-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

TCP

Protein Properties

Length: 717aa MW: 77843.4 Da PI: 7.9964

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00023742-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.4	3.1e-31	274	461	2	131
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 +g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+ G+d++sk+++WL+++a ai++l+ ++++ +s++ ++++ +s++ ss+ PSME_00023742-RA 274 TGGKDRHSKVRTAKGLRDRRVRLSVSTAIQFYDLQDRIGLDQPSKAVDWLMNAARSAIDDLPALDAEMPSASaGNVTQMNSSD--SSHlmhyv 364 689*************************************************************5555544432222222222..22233555 PP TCP 89 ......................................................kaaksaakskksqksaasalnlak.esrakarararert 126 ++++s+ s k +++ +s+ +++k + + +ar +arer PSME_00023742-RA 365 vspresataaaasvftafgyglgspkaqetnshnaingmaisiktlkesdlgrsNSSTSD-GSVKGSAEYTSNCSISKpDPNIEARFKARERA 456 666666666666777777777777777777777778888888888888888864222222.33333444444455555566666666666666 PP TCP 127 rekmr 131 +k + PSME_00023742-RA 457 GKKSA 461 65554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.9E-33	275	462	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.268	276	334	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence Send to blast
MAGGFAFSSV PWYTTNAAKS LGNVGLGPEA LSSRSNCSLK CNCKAGFEAF TDRSKCAALR 60 YSENDSSGAE VRRYCEALSS YPAGDQLAKS SNNCTTDTLL AAFKASNCTG PCVCCQEQKP 120 GLDANVTATS RQTLPNATLQ SANDQRICPK YRRELKTTNS THEISLEFKP GGINDAYSHN 180 MLSKSSEDSE AVRAAKVEIY SKDLAAFSES INECVLQEEY ASGRQNHDDN KIQEISKGSK 240 RKAREMERKT VAVEIQSARN VDLEARIVRV SRLTGGKDRH SKVRTAKGLR DRRVRLSVST 300 AIQFYDLQDR IGLDQPSKAV DWLMNAARSA IDDLPALDAE MPSASAGNVT QMNSSDSSHL 360 MHYVVSPRES ATAAAASVFT AFGYGLGSPK AQETNSHNAI NGMAISIKTL KESDLGRSNS 420 STSDGSVKGS AEYTSNCSIS KPDPNIEARF KARERAGKKS ASAKNSGSSP PAIHQLNLIQ 480 PSLSSMSQSV LPYTTLPLEF QQSSKDDNSC GIQSEVLTGT GSVQQLWDYN TPSCTEIICT 540 QDSHPLQNMA SSSTEALQKS FQPVQNTSSV HAVLGSSCLQ SYEMEDSAIP IFEPNQNRHL 600 ETNAVQGQAN LLYSNIPIFV KNVEQQQQQQ AQTHFKYFES KAVPTFFNDI NFSTSSLSSR 660 GPLQSNSSSI KNMPSISKTR RNAYGEASIK AAHFFPFQGY DSHTVFPANH DAGQRKA

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence Send to blast

MAGGFAFSSV PWYTTNAAKS LGNVGLGPEA LSSRSNCSLK CNCKAGFEAF TDRSKCAALR  60
YSENDSSGAE VRRYCEALSS YPAGDQLAKS SNNCTTDTLL AAFKASNCTG PCVCCQEQKP  120
GLDANVTATS RQTLPNATLQ SANDQRICPK YRRELKTTNS THEISLEFKP GGINDAYSHN  180
MLSKSSEDSE AVRAAKVEIY SKDLAAFSES INECVLQEEY ASGRQNHDDN KIQEISKGSK  240
RKAREMERKT VAVEIQSARN VDLEARIVRV SRLTGGKDRH SKVRTAKGLR DRRVRLSVST  300
AIQFYDLQDR IGLDQPSKAV DWLMNAARSA IDDLPALDAE MPSASAGNVT QMNSSDSSHL  360
MHYVVSPRES ATAAAASVFT AFGYGLGSPK AQETNSHNAI NGMAISIKTL KESDLGRSNS  420
STSDGSVKGS AEYTSNCSIS KPDPNIEARF KARERAGKKS ASAKNSGSSP PAIHQLNLIQ  480
PSLSSMSQSV LPYTTLPLEF QQSSKDDNSC GIQSEVLTGT GSVQQLWDYN TPSCTEIICT  540
QDSHPLQNMA SSSTEALQKS FQPVQNTSSV HAVLGSSCLQ SYEMEDSAIP IFEPNQNRHL  600
ETNAVQGQAN LLYSNIPIFV KNVEQQQQQQ AQTHFKYFES KAVPTFFNDI NFSTSSLSSR  660
GPLQSNSSSI KNMPSISKTR RNAYGEASIK AAHFFPFQGY DSHTVFPANH DAGQRKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-21	281	335	1	55	Putative transcription factor PCF6
5zkt_B	2e-21	281	335	1	55	Putative transcription factor PCF6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	6e-33	TCP family protein