PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00023605-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28397.9 Da PI: 8.342 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++ +G g+W++ ++ g+ R++k+c++rw +yl PSME_00023605-RA 14 KGAWTKEEDDRLIAHIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 59 | 1.1e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ lG++ W++Ia +++ gRt++q+k++w+++ PSME_00023605-RA 67 RGSFTEEEDELIIKLHSVLGNK-WSLIAGRLP-GRTDNQIKNYWNSH 111 89********************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.501 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.83E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.43E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 29.976 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.50E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGRSPCCEKN HTNKGAWTKE EDDRLIAHIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGSF TEEEDELIIK LHSVLGNKWS LIAGRLPGRT DNQIKNYWNS HIKRKLLSRG 120 LDPRSHLPLQ PPQLPHNSNI TWPSRPAPDH EIPAFQNCTA PEITDFFQHH RPERSPIESA 180 ASDAEEHPDL NLNLCISLPS NSTAAGNRTS SVHRTVDSNF NSGSSGMCYS GLQGNYSNCE 240 QNAGSLTQYM IVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-30 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012081759.1 | 3e-89 | myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 6e-89 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A3G6JFH7 | 1e-125 | A0A3G6JFH7_PINTA; Myb-related protein 4 | ||||
STRING | ERM93882 | 2e-88 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 8e-89 | myb domain protein 4 |